
How to Set Up an Effective Bookkeeping System for Your Non-Profit
Mar 31
3 min read
0
1
0
Introduction

Proper bookkeeping is essential for non-profits to maintain financial transparency, ensure compliance, and manage funds efficiently. An effective bookkeeping system helps organizations track income, expenses, and donor contributions while supporting financial decision-making. This guide outlines the key steps to setting up an efficient bookkeeping system for your non-profit.
1. Understand Non-Profit Bookkeeping Basics
Before setting up a bookkeeping system, it’s important to understand the unique aspects of non-profit accounting:
Fund Accounting: Non-profits categorize funds based on restrictions, such as unrestricted, temporarily restricted, and permanently restricted funds.
Compliance Requirements: Non-profits must adhere to legal requirements, such as IRS Form 990 (for U.S. organizations) and GAAP (Generally Accepted Accounting Principles).
Financial Reporting: Regular financial reporting ensures transparency and accountability to donors and stakeholders.
2. Choose the Right Accounting Method
Non-profits can use one of two accounting methods:
Cash Accounting: Records income and expenses when cash is received or paid.
Accrual Accounting: Records income and expenses when they are earned or incurred, regardless of cash flow.
Most non-profits use accrual accounting as it provides a more accurate financial picture.
3. Select a Bookkeeping Software
Choosing the right accounting software simplifies bookkeeping tasks and ensures accuracy. Popular options include:
QuickBooks Non-Profit – Ideal for small to medium-sized organizations.
Aplos – Specifically designed for non-profits, offering fund accounting and donor management.
Febi Non-Profit – Cloud-based accounting software with integration capabilities.
Blackbaud Financial Edge – Best for large non-profits requiring advanced financial management.
4. Set Up a Chart of Accounts
A chart of accounts categorizes all financial transactions, making reporting easier. Key categories include:
Assets: Cash, bank accounts, and investments.
Liabilities: Loans, accounts payable, and outstanding obligations.
Revenue: Donations, grants, fundraising income, and membership fees.
Expenses: Program costs, administrative expenses, and fundraising expenses.
Net Assets: Unrestricted, temporarily restricted, and permanently restricted funds.
5. Establish Internal Controls
Internal controls help prevent fraud and ensure accurate financial management. Best practices include:
Segregation of Duties: Assign different financial tasks to multiple individuals.
Regular Reconciliations: Reconcile bank statements with financial records monthly.
Approval Processes: Require dual authorization for large transactions.
Secure Record-Keeping: Maintain digital and physical backups of financial documents.
6. Track Donations and Grants Properly
Non-profits receive various types of income, requiring proper tracking:
Restricted vs. Unrestricted Donations: Clearly document restrictions on funds.
Grant Reporting: Ensure compliance with donor and grantor requirements.
In-Kind Contributions: Record the fair market value of donated goods and services.
7. Record and Categorize Expenses
Expense tracking helps maintain budget discipline and financial health. Key expense categories include:
Program Expenses: Direct costs related to the organization’s mission.
Administrative Expenses: Costs for staff salaries, office rent, and utilities.
Fundraising Expenses: Costs associated with donor outreach and events.
8. Prepare Financial Reports Regularly
Regular financial reporting ensures accountability and transparency. Key reports include:
Statement of Financial Position (Balance Sheet): Shows assets, liabilities, and net assets.
Statement of Activities (Income Statement): Details revenue sources and expenses.
Statement of Cash Flows: Tracks cash inflows and outflows.
Statement of Functional Expenses: Breaks down expenses into program, administrative, and fundraising costs.
9. Ensure Regulatory Compliance
Non-profits must adhere to legal and tax regulations to maintain their tax-exempt status:
File IRS Form 990 (U.S.): Provides financial transparency and reports income and expenses.
Comply with State and Federal Laws: Ensure adherence to grant conditions and tax regulations.
Conduct Regular Audits: Independent audits improve credibility and financial accuracy.
10. Train Staff and Volunteers on Bookkeeping Practices
Educating team members on financial management improves efficiency and accuracy. Consider:
Providing Accounting Training: Train staff on bookkeeping software and financial reporting.
Assigning Financial Oversight to the Board: Engage board members in reviewing financial reports.
Hiring a Professional Accountant: A CPA or non-profit bookkeeper can ensure compliance and accuracy.
Conclusion
Setting up an effective bookkeeping system is essential for the financial health and sustainability of non-profits. By implementing proper fund accounting, utilizing the right software, maintaining internal controls, and ensuring regulatory compliance, organizations can enhance transparency, gain donor trust, and focus on their mission. A well-organized bookkeeping system enables non-profits to make informed financial decisions and achieve long-term success.